Spaghetti plots for tf objects

Plots a line for each entry of a tf-object. geom_spaghetti does spaghetti (i.e. "hairball") plots, geom_meatballs does spaghetti plots with points for the actual evaluations.

Usage

stat_tf(
  mapping = NULL,
  data = NULL,
  geom = "spaghetti",
  position = "identity",
  na.rm = TRUE,
  show.legend = NA,
  inherit.aes = TRUE,
  arg = NULL,
  ...
)

geom_spaghetti(
  mapping = NULL,
  data = NULL,
  position = "identity",
  na.rm = TRUE,
  show.legend = NA,
  inherit.aes = TRUE,
  arg = NULL,
  ...
)

geom_meatballs(
  mapping = NULL,
  data = NULL,
  position = "identity",
  na.rm = TRUE,
  show.legend = NA,
  inherit.aes = TRUE,
  arg = NULL,
  spaghetti = TRUE,
  ...
)

Arguments

mapping

Set of aesthetic mappings created by aes(). If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot().

A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify() for which variables will be created.

A function will be called with a single argument, the plot data. The return value must be a data.frame, and will be used as the layer data. A function can be created from a formula (e.g. ~ head(.x, 10)).

geom

The geometric object to use to display the data, either as a ggproto Geom subclass or as a string naming the geom stripped of the geom_ prefix (e.g. "point" rather than "geom_point")

position

Position adjustment, either as a string naming the adjustment (e.g. "jitter" to use position_jitter), or the result of a call to a position adjustment function. Use the latter if you need to change the settings of the adjustment.

na.rm

remove NAs? defaults to TRUE

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes. It can also be a named logical vector to finely select the aesthetics to display.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. borders().

arg

where to evaluate the functions in y -- defaults to the default ;)

...

Other arguments passed on to layer(). These are often aesthetics, used to set an aesthetic to a fixed value, like colour = "red" or size = 3. They may also be parameters to the paired geom/stat.

spaghetti

plot noodles along with meatballs? defaults to TRUE.

Details

"Flipped" aesthetics are not implemented for these geoms.

y aesthetic

Mandatory. Used to designate a column of class tf to be visualized.

See also

geom_cappelini() for glyph plots, gglasagna() for heatmaps.

Other tidyfun visualization: ggcapellini, gglasagna()

Other tidyfun visualization: ggcapellini, gglasagna()

Other tidyfun visualization: ggcapellini, gglasagna()

Other tidyfun visualization: ggcapellini, gglasagna()

Other tidyfun visualization: ggcapellini, gglasagna()

Other tidyfun visualization: ggcapellini, gglasagna()

Other tidyfun visualization: ggcapellini, gglasagna()

Examples

set.seed(1221)
data <- data.frame(col = sample(gl(5, 2)))
data$f <- tf_rgp(10)
data$fi <- tf_jiggle(data$f)
data$fb <- tfb(data$f)
#> Percentage of input data variability preserved in basis representation
#> (per functional observation, approximate):
#>    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
#>   99.20   99.75   99.90   99.79   99.90  100.00 
library(ggplot2)
ggplot(data, aes(y = f, color = tf_depth(f))) +
  geom_spaghetti()

ggplot(data, aes(y = fi, shape = col, color = col)) +
  geom_meatballs()

ggplot(data, aes(y = fi)) +
  geom_meatballs(spaghetti = FALSE) +
  facet_wrap(~col)